STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW39234.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (253 aa)    
Predicted Functional Partners:
SCW93834.1
Amino acid adenylation domain-containing protein.
  
 0.980
SCW93796.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
 
 0.958
SCW93801.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 0.840
SCW39273.1
Spermidine/putrescine transport system permease protein.
 
     0.804
SCW87989.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.789
SCW39253.1
Spermidine/putrescine transport system permease protein.
       0.773
SCW67045.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.764
SCW95074.1
Propane monooxygenase reductase subunit.
 
 0.764
SCW39295.1
Spermidine/putrescine transport system substrate-binding protein.
 
     0.649
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
  
 0.648
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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