STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW45615.1Regulatory protein, luxR family. (341 aa)    
Predicted Functional Partners:
SCW45596.1
Spermidine/putrescine-binding protein.
 
     0.867
SCW43848.1
Proline racemase.
  
    0.705
SCW82393.1
Hypothetical protein.
  
     0.698
SCW39335.1
Regulatory protein, luxR family.
 
 0.694
SCW45633.1
Fibronectin type III domain-containing protein.
  
  
 0.678
SCW73863.1
Regulatory protein, luxR family.
 
 0.649
SCW45538.1
Spermidine/putrescine transport system permease protein.
 
     0.647
SCW45578.1
Allantoin racemase.
 
     0.641
SCW45499.1
Hypothetical protein.
 
     0.627
SCW43831.1
Polar amino acid transport system substrate-binding protein.
  
     0.619
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.