STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW55123.1Uncharacterized conserved protein YgbK, DUF1537 family. (462 aa)    
Predicted Functional Partners:
SCW55109.1
Ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family.
 
     0.948
SCW55133.1
Acetohydroxy acid isomeroreductase, NADPH-binding domain.
 
     0.931
SCW55186.1
Hypothetical protein.
 
     0.758
SCW67573.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
  
 0.615
SCW55147.1
Tripartite ATP-independent transporter solute receptor, DctP family.
       0.507
SCW86419.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.499
SCW68975.1
Nucleoside-diphosphate-sugar epimerase.
 
    0.427
SCW55095.1
Uncharacterized NAD(P)/FAD-binding protein YdhS.
       0.404
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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