Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCW32832.1 | SCW85551.1 | SAMN05660859_0619 | SAMN05660859_3216 | BMFP domain-containing protein YqiC. | Hypothetical protein. | 0.616 |
| SCW32832.1 | yacG | SAMN05660859_0619 | SAMN05660859_1859 | BMFP domain-containing protein YqiC. | Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.545 |
| SCW59281.1 | SCW59292.1 | SAMN05660859_1860 | SAMN05660859_1861 | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Protein-tyrosine-phosphatase; Manually curated; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.583 |
| SCW59281.1 | SCW59306.1 | SAMN05660859_1860 | SAMN05660859_1862 | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family. | 0.583 |
| SCW59281.1 | hisD-3 | SAMN05660859_1860 | SAMN05660859_1863 | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.556 |
| SCW59281.1 | yacG | SAMN05660859_1860 | SAMN05660859_1859 | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.800 |
| SCW59292.1 | SCW59281.1 | SAMN05660859_1861 | SAMN05660859_1860 | Protein-tyrosine-phosphatase; Manually curated; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.583 |
| SCW59292.1 | SCW59306.1 | SAMN05660859_1861 | SAMN05660859_1862 | Protein-tyrosine-phosphatase; Manually curated; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family. | 0.974 |
| SCW59292.1 | hisD-3 | SAMN05660859_1861 | SAMN05660859_1863 | Protein-tyrosine-phosphatase; Manually curated; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.785 |
| SCW59292.1 | yacG | SAMN05660859_1861 | SAMN05660859_1859 | Protein-tyrosine-phosphatase; Manually curated; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.633 |
| SCW59306.1 | SCW59281.1 | SAMN05660859_1862 | SAMN05660859_1860 | Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family. | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.583 |
| SCW59306.1 | SCW59292.1 | SAMN05660859_1862 | SAMN05660859_1861 | Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family. | Protein-tyrosine-phosphatase; Manually curated; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.974 |
| SCW59306.1 | hisD-3 | SAMN05660859_1862 | SAMN05660859_1863 | Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.785 |
| SCW59306.1 | yacG | SAMN05660859_1862 | SAMN05660859_1859 | Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family. | Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.641 |
| SCW85551.1 | SCW32832.1 | SAMN05660859_3216 | SAMN05660859_0619 | Hypothetical protein. | BMFP domain-containing protein YqiC. | 0.616 |
| SCW85551.1 | gyrA | SAMN05660859_3216 | SAMN05660859_1347 | Hypothetical protein. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.929 |
| SCW85551.1 | parC | SAMN05660859_3216 | SAMN05660859_1385 | Hypothetical protein. | Topoisomerase-4 subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. | 0.936 |
| SCW85551.1 | yacG | SAMN05660859_3216 | SAMN05660859_1859 | Hypothetical protein. | Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.484 |
| gyrA | SCW85551.1 | SAMN05660859_1347 | SAMN05660859_3216 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Hypothetical protein. | 0.929 |
| gyrA | gyrB | SAMN05660859_1347 | SAMN05660859_2773 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.998 |
page 1 of 3