STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW59786.1Aspartate/methionine/tyrosine aminotransferase. (404 aa)    
Predicted Functional Partners:
SCW87989.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.905
SCW93801.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 0.829
SCW93834.1
Amino acid adenylation domain-containing protein.
  
 
 0.788
SCW87889.1
Aspartate kinase; Belongs to the aspartokinase family.
  
 
 0.760
SCW35510.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.758
SCW39511.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.753
SCW86755.1
(2R)-3-sulfolactate dehydrogenase (NADP+); Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.730
SCW42086.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.666
SCW41629.1
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.621
SCW80692.1
Rhodanese-related sulfurtransferase.
     
 0.620
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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