STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW59972.1DNA-binding transcriptional regulator, MerR family. (143 aa)    
Predicted Functional Partners:
SCW87989.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.845
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.813
SCW91704.1
PAS domain S-box-containing protein.
   
 0.807
SCW53073.1
methylmalonyl-CoA mutase.
     
 0.737
SCW85420.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.734
SCW92319.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.694
SCW89693.1
Cd2+/Zn2+-exporting ATPase.
  
  
 0.563
SCW66956.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
    
  0.562
SCW91139.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
    
  0.562
SCW89182.1
hydroxymethylglutaryl-CoA lyase.
 
 
 0.519
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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