STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW60244.1Ribosomal protein S18 acetylase RimI. (149 aa)    
Predicted Functional Partners:
SCW86574.1
Protein N-acetyltransferase, RimJ/RimL family.
 
 
 0.932
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.773
ureB
Urease subunit gamma/beta; Belongs to the urease beta subunit family.
  
 
  0.655
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.625
SCW43848.1
Proline racemase.
    
 0.569
SCW53542.1
Transcriptional regulator, XRE family with cupin sensor.
   
 
  0.495
SCW74110.1
Helix-turn-helix domain-containing protein.
   
 
  0.495
SCW95087.1
Transcriptional regulator, XRE family with cupin sensor.
   
 
  0.495
SCW60294.1
DNA recombination protein RmuC.
  
    0.480
SCW93834.1
Amino acid adenylation domain-containing protein.
     
 0.458
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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