STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW68200.1Transcriptional regulator, TetR family. (225 aa)    
Predicted Functional Partners:
SCW68182.1
Amidase; Belongs to the amidase family.
 
     0.800
SCW68161.1
Cytosine deaminase.
 
     0.794
SCW93834.1
Amino acid adenylation domain-containing protein.
     
 0.516
SCW77605.1
Endoglucanase.
  
     0.511
SCW77581.1
Cellulose synthase (UDP-forming).
  
     0.501
SCW93796.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
      
 0.461
SCW68102.1
Peptide/nickel transport system substrate-binding protein.
 
     0.408
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.