STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW79988.1Serine protease Do; Belongs to the peptidase S1C family. (522 aa)    
Predicted Functional Partners:
SCW85131.1
Serine protease Do; Belongs to the peptidase S1C family.
  
  
 
0.915
SCW93700.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.778
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.760
SCW94776.1
Glycerol kinase.
    
 0.760
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.746
SCW32572.1
Acyl dehydratase.
    
  0.713
SCW32592.1
Acyl dehydratase.
    
  0.713
SCW53347.1
Probable Rubsico expression protein CbbX.
    
 0.707
SCW44589.1
Acyl-CoA dehydrogenase.
    
  0.667
SCW80400.1
glutaryl-CoA dehydrogenase.
    
  0.667
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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