STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW80136.1SSU ribosomal protein S6P modification protein; Belongs to the RimK family. (306 aa)    
Predicted Functional Partners:
SCW80125.1
triphosphoribosyl-dephospho-CoA synthase.
     0.966
SCW80292.1
Flavoprotein.
  
  
  0.963
SCW80167.1
Methylene-tetrahydromethanopterin dehydrogenase.
 
     0.951
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.949
SCW80159.1
Hypothetical protein.
 
     0.946
SCW80179.1
beta-RFAP synthase.
 
     0.900
SCW80203.1
Formylmethanofuran dehydrogenase, subunit B.
 
     0.844
SCW80213.1
Formylmethanofuran dehydrogenase, subunit A.
 
     0.838
ffsA
Formylmethanofuran-tetrahydromethanopterin formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.816
SCW80236.1
Formylmethanofuran dehydrogenase, subunit C.
 
     0.814
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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