STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW85064.1Uncharacterized conserved protein YcbK, DUF882 family. (592 aa)    
Predicted Functional Partners:
SCW85053.1
Murein L,D-transpeptidase YcbB/YkuD.
 
     0.876
SCW35880.1
Murein endopeptidase. Metallo peptidase. MEROPS family M74.
  
     0.708
SCW35759.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.700
SCW86369.1
Hypothetical protein.
  
     0.624
SCW36583.1
Putative membrane protein.
  
     0.581
SCW87283.1
Murein L,D-transpeptidase YafK.
  
    0.580
SCW94121.1
Protein of unknown function.
  
     0.534
SCW58249.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.516
SCW44727.1
Murein L,D-transpeptidase YafK.
  
    0.508
SCW96643.1
Hypothetical protein.
  
     0.501
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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