STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW94868.1Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid). (199 aa)    
Predicted Functional Partners:
SCW94845.1
Capsular exopolysaccharide family.
 
 
 0.996
SCW46634.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 
 
 0.989
SCW93519.1
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.986
SCW94885.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 0.982
SCW94877.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Manually curated; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.968
SCW94872.1
Hypothetical protein.
 
  
 0.962
SCW94948.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 0.942
SCW92342.1
Glycosyl transferases group 1.
  
 
 0.939
SCW94862.1
O-antigen ligase like membrane protein.
  
  
 0.908
SCW94849.1
Polysaccharide export outer membrane protein.
 
 
 0.902
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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