STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FTT_1776cHypothetical membrane protein; ORF ftt1776c. (132 aa)    
Predicted Functional Partners:
FTT_1777c
Hypothetical membrane protein; ORF ftt1777c.
      
0.774
FTT_1778c
Hypothetical membrane protein; ORF ftt1778c.
      
0.719
clcA
Carboxypeptidase,fragment; Similar to Q8RH52 Thermostable carboxypeptidase 1 (496 aa) FASTA: opt: 1208 Z-score: 1432.3 E(): 6.9e-72 Smith-Waterman score: 1208; 51.734 identity in 346 aa overlap. Truncated at N-terminal and has no start codon. ORF ftt1774c.
       0.574
Your Current Organism:
Francisella tularensis SCHUS4
NCBI taxonomy Id: 177416
Other names: F. tularensis subsp. tularensis SCHU S4, Francisella tularensis Biovar A str. SCHU S4, Francisella tularensis Biovar A str. Schu 4, Francisella tularensis subsp. tularensis SCHU S4, Francisella tularensis subsp. tularensis Schu 4, Francisella tularensis subsp. tularensis str. SCHU S4, Francisella tularensis subsp. tularensis strain SCHU S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.