STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
norMNorM; Multidrug efflux transporter NorM (MATE efflux family protein, Na-driven pump). (461 aa)    
Predicted Functional Partners:
rpsA1
RpsA1; 30S ribosomal protein S1.
 
    0.615
gap3
Gap3; NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase.
 
  
 0.585
rpsA2
RpsA2; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.560
ACN17207.1
Peptidase M28B family protein.
 
  
 0.530
epd
Epd; D-erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.524
gap1
Gap1; Glyceraldehyde-3-phosphate dehydrogenase Gap (GAPDH); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.524
gap2
Gap2; Glyceraldehyde-3-phosphate dehydrogenase Gap (GAPDH); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.524
gap4
Gap4; Glyceraldehyde-3-phosphate dehydrogenase Gap (GAPDH); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.524
ACN17899.1
ABC-type transport system, ATP-binding protein.
  
  
 0.496
msrAB
MsrAB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.480
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.