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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN13229.1Putative porin D precursor (outer membrane protein D2) (imipenem/basic amino acid-specific outer membrane pore). (415 aa)    
Predicted Functional Partners:
vacJ
VacJ lipoprotein [precursor].
    
 
 0.805
aglW
AglW; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.715
ACN13979.1
Zn-dependent dehydrogenase.
  
   
 0.648
ACN13541.1
Putative transcriptional regulator.
  
   
 0.605
ACN13340.1
Hypothetical 5-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb).
  
     0.562
ACN13226.1
ABC-type transporter, periplasmic substrate binding protein; Similar to Fe3+-hydroxamate transport system.
       0.527
ACN13227.1
ABC-type transporter, permease protein; Similar to Fe3+/FecCD family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.527
ACN13228.1
ABC-type transporter, ATP-binding protein.
       0.527
ACN13230.1
Putative ABC-type transporter, permease component.
       0.490
ACN13512.1
Conserved hypothetical protein.
  
   
 0.482
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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