Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACN13236.1Conserved hypothetical protein (SH3-like domain protein). (203 aa)    
Predicted Functional Partners:
ACN14247.1
Putative general secretion pathway protein L.
  
     0.656
ACN13483.1
Putative virulence factor (pectin lyase fold protein).
  
     0.480
ACN13237.1
Putative calcium-binding EF hand domain protein; Similar to transaldolase.
       0.460
fdx2
Fdx2; 4Fe-4S ferredoxin, iron-sulfur binding family protein Fdx2.
 
     0.440
dctQ4
DctQ4; TRAP-type C4-dicarboxylate permease, small subunit DctQ4.
  
     0.422
ACN13235.1
Hypothetical protein.
       0.410
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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