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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speBSpeB; Agmatinase SpeB (agmatine ureohydrolase) (AUH); Belongs to the arginase family. (289 aa)    
Predicted Functional Partners:
speA
SpeA; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
 
 0.976
speE1
SpeE1; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.939
ACN14131.1
Decarboxylase family protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.930
speE2
SpeE2; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.900
lysA1
LysA1; Saccharopine dehydrogenase/saccharopine reductase LysA.
   
 0.815
nspC
NspC; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.766
ftcD1
FtcD1; Formimidoyltransferase-cyclodeaminase FtcD.
  
    0.764
ftcD2
FtcD2; Formimidoyltransferase-cyclodeaminase FtcD.
  
    0.764
ubiE2
UbiE2; Ubiquinone/menaquinone biosynthesis methyltransferase UbiE.
       0.678
hutH
HutH; Histidine ammonia-lyase HutH; Belongs to the PAL/histidase family.
  
  
 0.676
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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