STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysA1LysA1; Saccharopine dehydrogenase/saccharopine reductase LysA. (392 aa)    
Predicted Functional Partners:
nspC
NspC; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.968
lysA3
LysA3; Diaminopimelate decarboxylase LysA; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.913
lysA4
LysA4; Diaminopimelate decarboxylase LysA (DAP decarboxylase).
  
 
 0.913
bioB2
BioB2; Biotin synthetase (Biotin synthetase).
   
 
  0.906
kamA1
KamA1; Lysine 2,3-aminomutase KamA.
     
  0.900
kamA2
KamA2; L-lysine 2,3-aminomutase KamA.
     
  0.900
ACN16018.1
YodO; L-lysine 2,3-aminomutase YodO.
     
  0.900
ACN16563.1
Putative lysine 2,3-aminomutase.
     
  0.900
speB
SpeB; Agmatinase SpeB (agmatine ureohydrolase) (AUH); Belongs to the arginase family.
   
 0.815
speA
SpeA; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
   
 0.802
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.