STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN13317.1mutT family protein, putative 78-dihydro-8-oxoguanine triphosphatase (8-oxo-dGTPase). (180 aa)    
Predicted Functional Partners:
mutY
MutY; A/G-specific adenine glycosylase MutY.
  
 0.786
ACN13318.1
Transcriptional regulator, homeodomain family protein.
  
  
 0.562
ACN13319.1
Predicted NADH:flavin oxidoreductase/NADH oxidase.
       0.561
ACN13320.1
Predicted NADH:flavin oxidoreductase.
       0.552
smuG
SmuG; Monofunctional, single-strand selective uracil-DNA glycosylase SmuG.
 
     0.504
birA
BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
   
 0.488
ACN16399.1
Putative amino-acid acetyltransferase.
  
  
 0.480
polA
PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.474
rnc
Two domain fusion protein Includes: metal-dependent phosphoesterase / ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
 
  
 0.472
ACN17767.1
Putative ATP-dependent DNA helicase.
  
  
 0.462
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.