STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adh5Adh5; Iron containing alcohol dehydrogenase Adh2. (413 aa)    
Predicted Functional Partners:
adh3
Adh3; Iron containing alcohol dehydrogenase Adh1.
 
    
0.830
ACN14475.1
Sensory box histidine kinase (PAS/PAC domain protein).
  
     0.771
ACN13979.1
Zn-dependent dehydrogenase.
  
 
 0.678
aor1
Aor1; Tungsten-containing aldehyde ferredoxin:oxidoreductase Aor1.
  
  
 0.672
ACN13327.1
Conserved hypothetical protein.
       0.580
cobT2
CobT2; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
  
 
 0.575
fdx4
Fdx4; 4Fe-4S ferredoxin, iron-sulfur binding family protein Fdx4.
  
  
 0.564
porA4
PorA4; Pyruvate:ferredoxin oxidoreductase, subunit PorA4.
  
  
 0.528
soxA1
SoxA1; Sarcosine oxidase, subunit alpha.
  
  
 0.524
glgA1
GlgA1; Glycogen synthase GlgA (Starch [bacterial glycogen] synthase).
   
  
 0.501
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.