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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kamA1KamA1; Lysine 2,3-aminomutase KamA. (436 aa)    
Predicted Functional Partners:
lysA1
LysA1; Saccharopine dehydrogenase/saccharopine reductase LysA.
     
  0.900
ACN17544.1
Acetyltransferase.
  
 0.848
bioB2
BioB2; Biotin synthetase (Biotin synthetase).
    
 0.817
lysA3
LysA3; Diaminopimelate decarboxylase LysA; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.800
lysA4
LysA4; Diaminopimelate decarboxylase LysA (DAP decarboxylase).
     
 0.800
cheR1
CheR1; Chemotaxis protein methyltransferase CheR.
    
   0.542
cheR2
CheR2; Chemotaxis protein methyltransferase CheR.
    
   0.542
lysS2
LysS2; lysyl-tRNA synthetase LysS (lysine--tRNA ligase) (LysRS).
 
  
 0.506
ddlB2
DdlB2; D-alanine--D-alanine ligase B2 (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A).
 
     0.443
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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