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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN13530.1Conserved hypothetical protein. (347 aa)    
Predicted Functional Partners:
ACN15082.1
Polysaccharide deacetylase family protein.
 
   
 0.805
ACN15086.1
Glycosyl transferase (group I).
 
     0.775
rfaL
RfaL protein (O-antigen ligase family protein).
 
     0.764
gumC1
GumC1; Protein GumC involved in exopolysaccharide biosynthesis.
 
     0.751
cpsE
CpsE; Galactosyl transferase CspE (type III capsular polysaccharide synthesis).
 
     0.726
ACN17718.1
Conserved hypothetical protein.
  
     0.725
ACN15099.1
Glycosyl transferase (group 1 family protein).
 
     0.721
ACN15079.1
Conserved hypothetical protein.
 
     0.701
ACN17633.1
Putative peptidase.
  
   
 0.664
ACN15104.1
Putative coenzyme F390 synthetase FtsA.
 
     0.641
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.