Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cspL | qmoC | HRM2_04470 | HRM2_04480 | CspL; Cold-shock protein CspL. | QmoC; Quinone-interacting membrane-bound oxidoreductase complex, subunit QmoC. | 0.445 |
| cspL | rapA | HRM2_04470 | HRM2_40500 | CspL; Cold-shock protein CspL. | RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA). | 0.504 |
| cspL | rplC | HRM2_04470 | HRM2_36260 | CspL; Cold-shock protein CspL. | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.442 |
| cspL | rplS | HRM2_04470 | HRM2_30960 | CspL; Cold-shock protein CspL. | RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.446 |
| cspL | rplT | HRM2_04470 | HRM2_04600 | CspL; Cold-shock protein CspL. | RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.470 |
| cspL | rpmA | HRM2_04470 | HRM2_31710 | CspL; Cold-shock protein CspL. | RpmA; 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.471 |
| cspL | rpmE | HRM2_04470 | HRM2_17070 | CspL; Cold-shock protein CspL. | RpmE; Binds the 23S rRNA. | 0.455 |
| cspL | rpsE | HRM2_04470 | HRM2_36090 | CspL; Cold-shock protein CspL. | RpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.438 |
| cspL | rpsL | HRM2_04470 | HRM2_36300 | CspL; Cold-shock protein CspL. | RpsL; With S4 and S5 plays an important role in translational accuracy. | 0.505 |
| cspL | rpsQ | HRM2_04470 | HRM2_36170 | CspL; Cold-shock protein CspL. | RpsQ; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.474 |
| qmoC | cspL | HRM2_04480 | HRM2_04470 | QmoC; Quinone-interacting membrane-bound oxidoreductase complex, subunit QmoC. | CspL; Cold-shock protein CspL. | 0.445 |
| rapA | cspL | HRM2_40500 | HRM2_04470 | RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA). | CspL; Cold-shock protein CspL. | 0.504 |
| rapA | rplC | HRM2_40500 | HRM2_36260 | RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA). | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.860 |
| rapA | rplT | HRM2_40500 | HRM2_04600 | RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA). | RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.405 |
| rapA | rpsE | HRM2_40500 | HRM2_36090 | RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA). | RpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.710 |
| rapA | rpsL | HRM2_40500 | HRM2_36300 | RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA). | RpsL; With S4 and S5 plays an important role in translational accuracy. | 0.470 |
| rapA | rpsQ | HRM2_40500 | HRM2_36170 | RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA). | RpsQ; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.474 |
| rplC | cspL | HRM2_36260 | HRM2_04470 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | CspL; Cold-shock protein CspL. | 0.442 |
| rplC | rapA | HRM2_36260 | HRM2_40500 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA). | 0.860 |
| rplC | rplS | HRM2_36260 | HRM2_30960 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.990 |
page 1 of 5