STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlr; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (387 aa)    
Predicted Functional Partners:
ald2
Ald2; Alanine dehydrogenase 2 Ald2; Belongs to the AlaDH/PNT family.
  
 
 0.981
murF
MurF; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.974
ddlA
DdlA; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.958
ddlB1
DdlB1; D-alanine-D-alanine ligase B1 (D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
  
 
 0.920
ddlB2
DdlB2; D-alanine--D-alanine ligase B2 (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A).
  
 
 0.920
dat
Dat; D-alanine aminotransferase Dat.
    
 0.918
ACN13932.1
Aminotransferase, class V (putative purine catabolism protein PucG).
    
 0.823
pflA
PflA; Pyruvate-formate lyase-activating enzyme PflA.
       0.781
nrdD
NrdD; Anaerobic ribonucleoside-triphosphate reductase NrdD.
       0.779
murD
MurD; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
 
 
 0.772
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.