STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpAUgpA; Sn-glycerol-3-phosphate ABC-type transporter, permease protein UgpA. (296 aa)    
Predicted Functional Partners:
ugpE
UgpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 0.999
ugpB
UgpB; Sn-glycerol 3-phosphate ABC-type transporter, periplasmic substrate binding protein UgpA.
 
 0.994
ugpC
UgpC; Sn-glycerol 3-phosphate ABC-type transporter, ATP binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 
 0.973
malG
MalG; ABC-type sugar transporter, permease protein MalG.
 
 0.929
ACN14938.1
ABC-type sugar transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.881
ACN14937.1
ABC-type transporter, ATP-binding protein (ATPase); Belongs to the ABC transporter superfamily.
 
 
 0.863
cysA
CysA; Sulfate/thiosulfate import ATP-binding protein CysA (sulfate-transporting ATPase); Belongs to the ABC transporter superfamily.
  
 
 0.832
ACN15668.1
ABC-type sugar transport system, periplamsic solute-binding protein.
 
 
 0.789
malE
MalE; ABC-type sugar transporter, periplasmic-binding protein MalE.
  
 
 0.754
ACN15454.1
Starch synthase (maltosyl-transferring); Predicted transmembrane fusion protein, alpha-amylase domain and alpha-1,6-glucosidase domain (glycogen debranching enzyme activity).
  
  
 0.513
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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