STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntrC1NtrC1; Sigma-54 dependent DNA-binding response regulator. (515 aa)    
Predicted Functional Partners:
rpoN
RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.782
ACN14535.1
FAD/NADPH dehydrogenase/oxidoreductase family protein (4Fe-4S ferredoxin).
   
 
 0.525
ACN13480.1
Putative aerobic respiration control sensor protein ArcB.
   
 
 0.488
ACN13649.1
Hypothetical protein.
       0.428
ACN13902.1
Two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein).
   
 
 0.406
ACN15511.1
Two-component protein, sensory box histidine kinase/response regulatory protein.
   
 
 0.406
ACN16332.1
Predicted fusion protein, periplasmic substrate-binding protein (N-terminal) / sensory box regulatory protein (C-terminal).
   
 
 0.401
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.