STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN13786.1Radical SAM domain protein. (857 aa)    
Predicted Functional Partners:
rne1
Rne1; Ribonuclease E and G (ribonuclease Rne/Rng family protein).
       0.820
asnS
AsnS; Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS).
       0.600
ACN16995.1
Hypothetical protein.
  
  
 0.530
ACN17002.1
Conserved hypothetical protein.
  
  
 0.530
rpmH
RpmH; 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
    0.507
rnpA
RnpA; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
    0.500
ACN13782.1
Conserved hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.486
ACN13788.1
Hypothetical protein.
       0.486
dksA3
DksA3; DnaK suppressor protein DksA.
  
    0.406
rsmB
RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
    0.405
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.