STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
racD2RacD2; Aspartate racemase family protein RacD. (234 aa)    
Predicted Functional Partners:
racD1
RacD1; Asparate racemace.
  
  
 
0.928
asnB
AsnB; Glutamine-hydrolyzing asparagine synthetase AsnB.
 
  
 0.927
aspG
AspG; L-asparaginase AspG.
    
 0.913
pyrB
PyrB; Aspartate carbamoyltransferase PyrB; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.913
ACN13274.1
Fumarate lyase (DEAD box).
    
 0.910
purA
PurA; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
  0.900
argG
ArgG; Argininosuccinate synthase ArgG (Citrulline--aspartate ligase); Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
  0.900
ACN16221.1
Putative aspartate/tyrosine/aromatic acid aminotransferase.
    
  0.900
ACN16811.1
Pyridoxal-dependent decarboxylase family protein.
    
  0.811
lysC
LysC; Aspartokinase LysC (aspartate kinase); Belongs to the aspartokinase family.
     
  0.800
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.