STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspA11UspA11; Universal stress protein UspA3. (161 aa)    
Predicted Functional Partners:
tmcA1
TmcA1; Acidic type II cytochrome TmcA1 (TpII-c3).
   
 
 0.825
tmcB2
TmcB2; Cytoplasmic Fe-S oxidoreductase (4Fe-4S ferredoxin).
      
 0.802
usp2
Usp2; Universal stress protein Usp.
  
     0.764
uspA14
UspA14; Universal stress protein UspA6.
  
     0.735
ACN13894.1
Branched-chain ABC-type amino acid transporter, substrate-binding protein.
       0.581
uspA8
UspA8; Putative universal stress protein UspA.
  
     0.570
ACN13893.1
Predicted Na(+)-dicarboxylate cotransporter (solute carrier family 13 protein).
  
    0.522
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.