STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN13903.1Cation-efflux family protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (393 aa)    
Predicted Functional Partners:
nifH1
NifH1; Nitrogen fixation-related protein NifH (4Fe-4S cluster binding protein); Belongs to the NifH/BchL/ChlL family.
  
  
 0.655
hflK
HflK; HflC and HflK could encode or regulate a protease.
  
   0.617
thrS1
ThrS1; threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS).
       0.574
copA
CopA; Copper-transporting P-type ATPase CopA.
  
 
 0.553
fur
Fur; Ferric uptake regulation protein; Belongs to the Fur family.
     
 0.552
ACN13902.1
Two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein).
  
  
 0.548
ACN13901.1
Sigma-54 dependent DNA-binding response regulator.
       0.486
ACN16491.1
Putative ABC-type manganese/zinc transport system, permease component.
     
 0.472
flgF
FlgF; Flagellar basal-body rod protein FlgF.
   
 
 0.468
nifH2
NifH2; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.
  
  
 0.415
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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