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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltB1GltB1; Periplasmic solute-binding protein GltB [precursor] (periplasmic glutamate/aspartate binding protein GltB [precursor]). (290 aa)    
Predicted Functional Partners:
gltJ1
GltJ1; Glutamate/aspartate transport system, permease protein GltJ.
 
 0.927
gltK1
GltK1; Glutamate/aspartate transport system, permease protein GltK.
 
 
 0.922
gltL1
GltL1; Glutamate/aspartate transport system, ATP-binding protein GltL.
 
 0.902
gltJ2
GltJ2; Glutamate/aspartate transport system permease protein GltJ.
 
 0.835
gltK2
GltK2; Glutamate/aspartate transport system permease protein GltK.
 
 
 0.826
glnQ3
GlnQ3; Glutamine transport system, ATP-binding protein GlnQ3.
 
 0.749
gltL2
GltL2; Glutamate/aspartate transport ATP-binding protein GltL.
 
 0.709
aapP2
AapP2; General L-amino acid transport ATP-binding protein AapP.
 
 0.663
ACN17143.1
ABC-type amino acid transport system, permease protein.
 
 0.660
aapP1
AapP1; Glutamate/glutamine/aspartate/asparagine transport system, ATP-binding component AapP.
 
 0.646
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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