STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN14007.1TonB-dependent outer-membrane uptake protein. (718 aa)    
Predicted Functional Partners:
ACN14006.1
Hydrolase (alpha/beta superfamily protein).
       0.773
ACN14008.1
Conserved hypothetical protein.
       0.773
tonB
TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.724
gpsA1
GpsA1; Glycerol-3-phosphate dehydrogenase [NAD(P)+].
 
     0.600
ACN16140.1
Hypothetical protein.
  
 
 0.591
ACN14452.1
TonB-like outer membrane receptor protein.
  
   
 0.543
rbsB
RbsB; ABC-type ribose transport system, periplasmic D-ribose-binding protein RsbB [precursor].
  
     0.506
tolQ3
TolQ3; Biopolymer transport protein TolQ2.
 
  
 0.505
tolQ2
TolQ2; Biopolymer transport protein TolQ1.
 
  
 0.493
ACN13767.1
Transposase (IS4 family protein).
  
     0.477
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.