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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
napHNapH; Iron-sulfur binding protein NapH (4Fe-4S ferredoxin). (278 aa)    
Predicted Functional Partners:
fdx5
Fdx5; 4Fe-4S ferredoxin, iron-sulfur binding family protein Fdx5.
 
 
 0.959
napC
NapC; Trimethylamine N-oxide reductase, membrane-bound cytochrome c-type subunit NapC.
  
 
 0.854
fixO
FixO; Cytochrome C oxidase, mono-heme subunit FixO.
  
  
 0.821
ACN15388.1
4Fe-4S ferredoxin, iron-sulfur cluster binding protein.
 
  
 0.789
fdhA2
FdhA2; Periplasmic formate dehydrogenase, alpha subunit FdhA2 (selenocysteine protein).
  
  
 0.639
fdhA7
FdhA7; Periplasmic formate dehydrogenase, alpha subunit FdhA7 (selenocysteine protein); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.639
fdhA8
FdhA8; Periplasmic formate dehydrogenase, alpha subunit FdhA8 (selenocysteine protein).
  
  
 0.639
mopA
MopA; Molybdopterin oxidoreductase, iron-sulfur binding subunit MopA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.584
fdx4
Fdx4; 4Fe-4S ferredoxin, iron-sulfur binding family protein Fdx4.
 
 
 0.534
ACN14066.1
Putative 16S rRNA processing protein RimM (selenocysteine protein).
       0.527
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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