STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagDNagD; Sugar phosphatase NagD; Belongs to the HAD-like hydrolase superfamily. (285 aa)    
Predicted Functional Partners:
ACN16722.1
Putative ATPase; Related to the helicase subunit of the Holliday junction resolvase.
 
      0.560
sat1
Sat1; Bifunctional sulfate adenyltransferase Sat1 (ATP sulfurylase (SUL) / adenylylsulfate kinase (KIN) domain).
  
 
 0.504
aroH
AroH; Phospho-2-dehydro-3-deoxyheptonate aldolase AroH.
     
 0.501
metS
MetS; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
   0.423
lspA
LspA; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
    0.422
ACN13814.1
Putative phosphoglycerate/bisphosphoglycerate mutase (Phosphoglyceromutase) (PGAM).
      0.420
cmk1
Cmk1; Cytidine monophosphate kinase Cmk.
  
    0.406
ACN13341.1
Predicted RNA polymerase ECF-type sigma factor(extracytoplasmic function); Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.403
ACN13417.1
DNA-directed RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.403
rpoE
RpoE; DNA-directed RNA polymerase, specialized sigma subunit RpoE (Sigma-24); Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.403
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.