STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acsL2AcsL2; long-chain-fatty-acid-CoA ligase AcsL2 (AMP-binding protein). (556 aa)    
Predicted Functional Partners:
ACN16274.1
Predicted polyketide synthase.
  
 0.887
aroA
AroA; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
 
      0.820
ACN14111.1
enoyl-CoA hydratase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.769
mmc
Mmc; Methylmalonyl-CoA carboxylase (12S subunit).
  
 
 0.740
acd3
Acd3; Short-chain specific acyl-CoA dehydrogenase/oxidase Acd3 (butyryl-CoA dehydrogenase).
 
  
 0.705
ACN14308.1
Transcriptional regulator (XRE-family protein).
  
 0.602
fadB
FadB; 3-hydroxyacyl-CoA dehydrogenase FadB.
  
 
 0.571
hmgL
HmgL; hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase) (HL).
  
  
 0.528
acsM2
AcsM2; middle-chain-fatty-acid-acyl-CoA synthetase AcsM2 (AMP-binding protein).
 
 
0.526
rplF
RplF; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.514
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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