STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspF1GspF1; General secretion pathway protein F. (411 aa)    
Predicted Functional Partners:
gspE1
GspE1; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 0.926
gspE2
GspE2; Type II secretion system protein E.
 
 0.926
pilB
PilB; Type IV pilus biogenesis protein PilB.
 
 0.926
gspE3
GspE3; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 0.926
tapB
TapB; Type IV pilus assembly protein TapB.
 
 0.926
gspF2
GspF2; General secretion pathway protein GspF (Type II secretory pathway).
  
  
 
0.912
gspL
GspL; General secretion pathway protein GspL.
   
 
 0.908
pilD
PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.880
gspG1
GspG1; General secretion pathway protein G [precursor].
 
  
 0.814
pilT1
PilT1; Pili retraction protein PilT1.
 
  
 0.810
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.