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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN14308.1Transcriptional regulator (XRE-family protein). (186 aa)    
Predicted Functional Partners:
acsM2
AcsM2; middle-chain-fatty-acid-acyl-CoA synthetase AcsM2 (AMP-binding protein).
 
 0.993
acsM1
AcsM1; middle-chain-fatty-acid-acyl-CoA synthetase AcsM1 (AMP-binding protein).
 
 0.869
acsL4
AcsL4; long-chain-fatty-acid-CoA ligase AcsL4 (AMP-binding protein).
  
 0.686
acsM4
AcsM4; middle-chain-fatty-acid-acyl-CoA synthetase AcsM4 (AMP-binding protein).
 
 
 0.648
ACN16274.1
Predicted polyketide synthase.
  
 
 0.642
acsL2
AcsL2; long-chain-fatty-acid-CoA ligase AcsL2 (AMP-binding protein).
  
 0.602
ACN16420.1
Transcriptional regulator (GntR family protein).
  
  
 0.594
hutC
HutC; Histidine utilization repressor HutC.
  
  
 0.594
tatD2
TatD2; Mg-dependent DNase TatD.
   
   0.590
ACN14182.1
Keto/isovalerate ferredoxin oxidoreductase, beta subunit.
 
   0.505
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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