STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appDAppD; ABC-type oligopeptide transport system, ATP-binding protein AppD; Belongs to the ABC transporter superfamily. (338 aa)    
Predicted Functional Partners:
appC
AppC; ABC-type oligopeptide transport system, permease protein AppC.
  
 0.997
dppC1
DppC1; ABC-type oliopeptide/dipeptide transporter, permease protein DppC.
  
 0.988
ACN17472.1
ABC-type dipeptide transport system; permease component.
  
 0.988
dppC3
DppC3; Peptide ABC transporter, permease protein DppC.
  
 0.988
dppC2
DppC2; ABC-type dipeptide transport system permease component DppC.
  
 0.986
appB
AppB; ABC-type oligopeptide transporter, permease protein AppB.
 
 0.975
appF1
AppF1; ABC-type oligopeptide transport system, ATPase component AppF; Belongs to the ABC transporter superfamily.
 
  
0.915
ACN15823.1
Dipeptide/oligopeptide transport system, inner membrane permease component.
   
 0.904
potA2
PotA2; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
    
0.902
ACN17470.1
ABC-type transport system; permease component.
 
 0.902
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.