STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appBAppB; ABC-type oligopeptide transporter, permease protein AppB. (305 aa)    
Predicted Functional Partners:
appC
AppC; ABC-type oligopeptide transport system, permease protein AppC.
  
 0.977
appD
AppD; ABC-type oligopeptide transport system, ATP-binding protein AppD; Belongs to the ABC transporter superfamily.
 
 0.975
appF1
AppF1; ABC-type oligopeptide transport system, ATPase component AppF; Belongs to the ABC transporter superfamily.
  
 0.970
appA
AppA; ABC-type oligopeptide transport system, substrate binding protein AppA.
 
 0.940
dppA2
DppA2; ABC-type oliopeptide/dipeptide transporter, periplasmic binding protein DppA.
 
 0.926
dppC1
DppC1; ABC-type oliopeptide/dipeptide transporter, permease protein DppC.
  
 0.908
dppC2
DppC2; ABC-type dipeptide transport system permease component DppC.
  
 0.908
dppC3
DppC3; Peptide ABC transporter, permease protein DppC.
  
 0.902
ACN17472.1
ABC-type dipeptide transport system; permease component.
  
 0.901
dppD2
DppD2; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component DppD; Belongs to the ABC transporter superfamily.
 
 0.894
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.