STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appAAppA; ABC-type oligopeptide transport system, substrate binding protein AppA. (514 aa)    
Predicted Functional Partners:
appB
AppB; ABC-type oligopeptide transporter, permease protein AppB.
 
 0.940
appC
AppC; ABC-type oligopeptide transport system, permease protein AppC.
 
 0.935
ACN14400.1
Peptidase (M20 family protein).
 
     0.887
dppB1
DppB1; ABC-type oliopeptide/dipeptide transporter, permease protein DppB.
 
 0.830
appF1
AppF1; ABC-type oligopeptide transport system, ATPase component AppF; Belongs to the ABC transporter superfamily.
 
  
 0.823
dppC1
DppC1; ABC-type oliopeptide/dipeptide transporter, permease protein DppC.
 
 0.813
appD
AppD; ABC-type oligopeptide transport system, ATP-binding protein AppD; Belongs to the ABC transporter superfamily.
 
  
 0.806
dppB2
DppB2; ABC-type dipeptide transport system permease component DppB.
 
 0.785
ACN17472.1
ABC-type dipeptide transport system; permease component.
 
 0.784
dppC2
DppC2; ABC-type dipeptide transport system permease component DppC.
 
 0.784
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.