STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN14406.1Peptidase (M20/M25/M40 family protein). (398 aa)    
Predicted Functional Partners:
ACN14407.1
Putative transcriptional regulator (IclR-family protein).
       0.747
appA
AppA; ABC-type oligopeptide transport system, substrate binding protein AppA.
   
 
 0.627
ACN14312.1
Chloromuconate cycloisomerase-like protein; Catalyzes the epimerization of L-Lys-L-Arg to L-Lys-D-Arg (in vitro). Catalyzes the epimerization of positively charged dipeptides, with a preference for substrates with a basic amino acid in the second position. Has epimerase activity with L-Lys-L-Lys, L-Arg-L-Arg, L-Val- L-Arg, L-Val-L-Lys and L-Ala-L-Arg (in vitro).
 
   
 0.532
ACN14400.1
Peptidase (M20 family protein).
     
 0.478
appB
AppB; ABC-type oligopeptide transporter, permease protein AppB.
  
    0.451
appD
AppD; ABC-type oligopeptide transport system, ATP-binding protein AppD; Belongs to the ABC transporter superfamily.
  
    0.446
appC
AppC; ABC-type oligopeptide transport system, permease protein AppC.
  
    0.445
appF1
AppF1; ABC-type oligopeptide transport system, ATPase component AppF; Belongs to the ABC transporter superfamily.
  
    0.442
ACN14399.1
Putative sodium/bile acid symporter family protein.
  
    0.434
mdlA
MdlA; Mandelate racemase MdlA; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.408
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.