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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysM1LysM1; Peptidoglycan-binding protein LysM. (568 aa)    
Predicted Functional Partners:
ACN14410.1
Sensory histidine kinase/response regulator.
 
     0.786
ACN17389.1
Hypothetical protein.
 
   
 0.753
ACN15124.1
UDP glycosyltransferase family protein.
  
     0.652
ACN15040.1
Hypothetical protein.
  
     0.643
ACN15123.1
Conserved hypothetical protein.
  
     0.610
ACN15613.1
Conserved hypothetical protein.
  
     0.573
ACN15028.1
Integrase family protein.
  
     0.543
ACN17522.1
Integrase family protein.
  
     0.543
ACN13483.1
Putative virulence factor (pectin lyase fold protein).
  
     0.537
ACN17725.1
Putative signal transduction protein.
  
     0.508
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.