Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACN14719.1 | ACN14720.1 | HRM2_16100 | HRM2_16110 | Rhodanese-like domain family protein. | Putative permease. | 0.845 |
| ACN14719.1 | ACN14721.1 | HRM2_16100 | HRM2_16120 | Rhodanese-like domain family protein. | Hypothetical protein. | 0.490 |
| ACN14719.1 | rplC | HRM2_16100 | HRM2_36260 | Rhodanese-like domain family protein. | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.467 |
| ACN14719.1 | rplK | HRM2_16100 | HRM2_36360 | Rhodanese-like domain family protein. | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.479 |
| ACN14719.1 | rplM | HRM2_16100 | HRM2_30470 | Rhodanese-like domain family protein. | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.556 |
| ACN14719.1 | rplQ | HRM2_16100 | HRM2_35990 | Rhodanese-like domain family protein. | RplQ; 50S ribosomal protein L17. | 0.521 |
| ACN14719.1 | rplU | HRM2_16100 | HRM2_31700 | Rhodanese-like domain family protein. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.532 |
| ACN14719.1 | rplX | HRM2_16100 | HRM2_36150 | Rhodanese-like domain family protein. | RplX; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.465 |
| ACN14719.1 | rpsQ | HRM2_16100 | HRM2_36170 | Rhodanese-like domain family protein. | RpsQ; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.590 |
| ACN14719.1 | ybeY | HRM2_16100 | HRM2_35790 | Rhodanese-like domain family protein. | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.658 |
| ACN14720.1 | ACN14719.1 | HRM2_16110 | HRM2_16100 | Putative permease. | Rhodanese-like domain family protein. | 0.845 |
| ACN14720.1 | ACN14721.1 | HRM2_16110 | HRM2_16120 | Putative permease. | Hypothetical protein. | 0.661 |
| ACN14721.1 | ACN14719.1 | HRM2_16120 | HRM2_16100 | Hypothetical protein. | Rhodanese-like domain family protein. | 0.490 |
| ACN14721.1 | ACN14720.1 | HRM2_16120 | HRM2_16110 | Hypothetical protein. | Putative permease. | 0.661 |
| rplC | ACN14719.1 | HRM2_36260 | HRM2_16100 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Rhodanese-like domain family protein. | 0.467 |
| rplC | rplK | HRM2_36260 | HRM2_36360 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
| rplC | rplM | HRM2_36260 | HRM2_30470 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplQ | HRM2_36260 | HRM2_35990 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | RplQ; 50S ribosomal protein L17. | 0.995 |
| rplC | rplU | HRM2_36260 | HRM2_31700 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.990 |
| rplC | rplX | HRM2_36260 | HRM2_36150 | RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | RplX; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.998 |
page 1 of 4