STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eriC1EriC1; Voltage gated chloride channel protein EriC. (576 aa)    
Predicted Functional Partners:
uspA12
UspA12; Universal stress protein UspA4.
 
    0.844
ptsN1
PtsN1; Fructose-specific phosphotransferase system protein PtsN1 (PTS system EIIA).
       0.794
motB1
MotB1; Flagellar motor protein MotB (PomB homolog).
       0.614
guaA1
GuaA1; Catalyzes the synthesis of GMP from XMP.
  
  
 0.543
trkA3
TrkA3; Na+/H+ antiporter (TrkA-N:TrkA-C).
     
 0.543
rfbB
RfbB; dTDP-glucose 4,6-dehydratase RfbB; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.543
ACN14745.1
Metal dependent response regulator.
       0.516
motA1
MotA1; Sodium-driven polar flagellar protein MotA (PomA homolog).
       0.505
ACN16274.1
Predicted polyketide synthase.
  
  
 0.499
alsT
AlsT; Sodium/alanine- (Na+/Ala-) symporter AlsT.
  
    0.496
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.