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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selD1SelD1; Selenide water dikinase 1 SelD. (306 aa)    
Predicted Functional Partners:
selA
SelA; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.981
trxB
TrxB; Thioredoxin reductase (TRXR).
     
 0.914
selD2
SelD2; Synthesizes selenophosphate from selenide and ATP.
  
  
 
0.904
ACN17737.1
Putative NADH dehydrogenase, FAD-containing subunit.
      0.901
selB
SelB; Selenocysteine-specific translation elongation factor SelB.
 
   
 0.812
ACN17647.1
Conserved hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.789
iscS1
IscS1; Cysteine desulfurase IscS (aminotransferase, class V; NifS homolog protein).
    
 0.779
iscS2
IscS2; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
    
 0.699
atpB2
AtpB2; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
       0.680
ACN14887.1
Conserved hypothetical protein associated with ATP synthase F0F1.
       0.680
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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