STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdtXKdtX; Lipopolysaccharide biosynthesis glycosyl transferase KdtX. (267 aa)    
Predicted Functional Partners:
tagB1
TagB1; CDP-glycerol:glycerophosphate glycerophosphotransferase TagB1; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.973
msbB
MsbB; Lipid A biosynthesis lauroyl acyltransferase MsbA.
 
   
 0.850
lpxK
LpxK; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
   
 0.674
rfbP
RfbP; Undecaprenyl-phosphate (UDP)-galactose-phosphotransferase RfbP (Galactosyl-P-P-undecaprenol synthetase).
 
  
 0.573
rfaF
RfaF; ADP-heptose:LPS heptosyltransferase RfaF (glycosyltransferase family protein).
 
  
 0.505
cpsE
CpsE; Galactosyl transferase CspE (type III capsular polysaccharide synthesis).
  
  
 0.504
gmhB
GmhB; D,D-heptose 1,7-bisphosphate phosphatase GmhB.
 
 0.452
ACN16274.1
Predicted polyketide synthase.
  
 
 0.434
kdsD
KdsD; Arabinose 5-phosphate isomerase KdsD; Belongs to the SIS family. GutQ/KpsF subfamily.
 
    0.418
ACN13343.1
Hypothetical protein.
  
 
 
 0.416
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.