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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaG1RfaG1; Glycosyltransferase RfaG (cell wall biogenesis protein). (379 aa)    
Predicted Functional Partners:
ACN14917.1
Radical SAM domain protein.
  
    0.790
rfaG2
RfaG2; Glycosyl-/hexosyl-transferase RfaG.
  
     0.764
ACN15095.1
Hypothetical protein.
  
     0.697
cpsE
CpsE; Galactosyl transferase CspE (type III capsular polysaccharide synthesis).
 
  
 0.658
ACN17767.1
Putative ATP-dependent DNA helicase.
    
 
 0.633
rfbP
RfbP; Undecaprenyl-phosphate (UDP)-galactose-phosphotransferase RfbP (Galactosyl-P-P-undecaprenol synthetase).
 
  
 0.605
ACN15099.1
Glycosyl transferase (group 1 family protein).
 
     0.596
wecC
WecC; NAD-binding UDP-glucose 6-dehydrogenase WecC (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH); Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.586
ACN15630.1
Putative lipopolysaccharide N-acetyl-glycoaminyltransferase.
  
     0.562
capD1
CapD1; Capsular polysaccharide biosynthesis protein CapD1.
 
  
 0.548
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.