STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nahJNahJ; 4-oxalocrotonate tautomerase NahJ. (66 aa)    
Predicted Functional Partners:
ACN17430.1
Conserved hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
     
  0.900
ACN14952.1
Oxidoreductase (3-oxoacyl-[acyl-carrier-protein] reductase).
     
 0.670
comF
ComF; Competence protein F (Phosphoribosyltransferase family protein).
       0.503
citC
CitC; NADP-dependent isocitrate dehydrogenase CitC (Oxalosuccinate decarboxylase) (IDH).
       0.468
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.