STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaG2RfaG2; Glycosyl-/hexosyl-transferase RfaG. (377 aa)    
Predicted Functional Partners:
ACN15095.1
Hypothetical protein.
 
     0.895
rfaL
RfaL protein (O-antigen ligase family protein).
 
  
 0.861
ACN15099.1
Glycosyl transferase (group 1 family protein).
 
    
0.851
ACN15103.1
Putative polysaccharide deacetylase family protein.
 
  
 0.844
carB1
CarB1; Carbamoyl-phosphate synthase, large subunit CarB1.
 
     0.818
cpsE
CpsE; Galactosyl transferase CspE (type III capsular polysaccharide synthesis).
 
  
 0.794
rfaG1
RfaG1; Glycosyltransferase RfaG (cell wall biogenesis protein).
  
     0.764
ACN15104.1
Putative coenzyme F390 synthetase FtsA.
 
    0.743
ACN15100.1
Hypothetical protein.
       0.741
ACN15101.1
Hypothetical protein.
       0.741
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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