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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN15107.1Hypothetical protein. (142 aa)    
Predicted Functional Partners:
cas1
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.561
ACN15366.1
Response regulator protein (CheY-like protein).
  
     0.536
ACN14058.1
Predicted death-on-curing family protein.
 
  
 0.518
ACN15108.1
Putative VanZ-like membrane protein.
       0.509
mazF
MazF; Toxic component of a type II toxin-antitoxin (TA) system.
  
   
 0.503
capA
CapA; Capsular biosynthesis protein CapA (poly-gamma-glutamate biosynthesis).
       0.502
pyrK
PyrK; Dihydroorotate dehydrogenase, electron transfer subunit PyrK.
       0.502
cysK
CysK; Cysteine synthase CysK (pyridoxal-phosphate dependent enzyme).
       0.490
ACN14047.1
Hypothetical protein.
 
  
 0.465
ACN14611.1
Putative ATP-dependent endonuclease (OLD family protein).
  
     0.441
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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